Physical microscopic model of proteins under force.

نویسنده

  • Nikolay V Dokholyan
چکیده

Nature has evolved proteins to counteract forces applied on living cells, and has designed proteins that can sense forces. One can appreciate Nature's ingenuity in evolving these proteins to be highly sensitive to force and to have a high dynamic force range at which they operate. To achieve this level of sensitivity, many of these proteins are composed of multiple domains and linking peptides connecting these domains, each of them having their own force response regimes. Here, using a simple model of a protein, we address the question of how each individual domain responds to force. We also ask how multidomain proteins respond to forces. We find that the end-to-end distance of individual domains under force scales linearly with force. In multidomain proteins, we find that the force response has a rich range: at low force, extension is predominantly governed by "weaker" linking peptides or domain intermediates, while at higher force, the extension is governed by unfolding of individual domains. Overall, the force extension curve comprises multiple sigmoidal transitions governed by unfolding of linking peptides and domains. Our study provides a basic framework for the understanding of protein response to force, and allows for interpretation experiments in which force is used to study the mechanical properties of multidomain proteins.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Different PVA-Hydroxypropyl Guar Gum Irradiated Nanosilica Composite Membranes for Model Drug Delivery Device

   High strength and elastic biodegradable membranes are of great demand in modern technology. Similar membranes have been developed by irradiating different weight poly (vinyl alcohol) (PVA) – hydroxypropyl guar gum (HPG) blends and followed by combining with ex situ nanosilica. Polarized light microscopic (PLM) study indicates that electron beam irradiation produced crosslinks and develop...

متن کامل

Microscopic modeling of the dynamics of frictional adhesion in the gecko attachment system.

We present a simple microscopic model describing the unique friction behavior of gecko setal arrays as they are dragged on smooth surfaces. Unlike other solids of high elastic modulus that do not stick under van der Waals forces alone, the gecko setal arrays do not require a compressive force to display a drag resistance but rather develop a tensile normal force when they are dragged (J. Experi...

متن کامل

Microscopic Modeling of Crowds Involving Individuals with Physical Disability: Exploring Social Force Interaction

Microscopic Modeling of Crowds involving Individuals with Physical Disability: Exploring Social Force Interaction

متن کامل

مدلسازی حذف الکترومغناطیسی آخال به صورت پیوسته از مذاب فلزات

In this research, a 3-D mathematical model is developed for simulating electromagnetic continuous removal of inclusions from molten metals. The model includes the computation of electromagnetic force field and fluid flow in the presence of electromagnetic forces. The results of flow field together with electromagnetic force field were further used for calculating the trajectory of inc...

متن کامل

Native flexibility of structurally homologous proteins: insights from anisotropic network model

BACKGROUND Single-molecule microscopic experiments can measure the mechanical response of proteins to pulling forces applied externally along different directions (inducing different residue pairs in the proteins by uniaxial tension). This response to external forces away from equilibrium should in principle, correlate with the flexibility or stiffness of proteins in their folded states. Here, ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • The journal of physical chemistry. B

دوره 116 23  شماره 

صفحات  -

تاریخ انتشار 2012